rs49399144 SNP Detail

Summary

• ID
  rs49399144
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:126221018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACATAACAC ATATGTAAAC
  ATATACATAC ATGTACGCGT ATATCATATA TATTAATGTA TGTGTATATA TATATGTATA
  CATACACACA CACATATATA TATATATATA TGCATGTAAC ACATACATGC ATGTGATATT
  GAGTAATAGA AAGACAGGCT GTGTGTGTAA AGAAGATCAA GGATGGGTTA ATGGAAAAAA
  Y
  TCAAAAATAA AAGAAAAAAT TCTGAAGTGA TTTCTGTTTC TGTTCTGAGA CTAAAGGGTT
  AGCCTTTTGC ACACACCACA TGAACTAGAC CCTCTTTCCT ATGCCCTTCA GCTGTCCCAT
  AAGAAGCTAC CCCCTGAAAA CCTGCAGATA CGAAACTCTA GAATATACCT GCAGCTACTC
  ACAAGTGTGC AAAGGTGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61330268	NES16945046	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49399144					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61330268	NES16945046	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:126221018 () rs orientation: forward

Symbol	Name	Function Class
Gm66003	predicted gene, 66003	within coordinates
Gm67983	predicted gene, 67983	1947 bp upstream
Rr213438	regulatory region 213438	618 bp distal
Rr213439	regulatory region 213439	1383 bp proximal
Rr221931	regulatory region 221931	1395 bp proximal