rs49399304 SNP Detail

Summary

• ID
  rs49399304
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:43873983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTAAACCA ATGGTGAACA
  CGTTGGGATC AAACACCTTT TCCAAACTGT CCTCGTGAAT GGGAGGCATA GCGAAGTGAG
  GGGCTGGAGA GTTTGGGACC CGGGCCTTCT TCTTTTTCTG GGGCACACAT ACTGCACTGT
  CCATCTTTTT AATAATTTCA GTGAATTTTT CCATATCAGA AGAAGAATCC AAGACACTAT
  Y
  GTCACTACCA GCAGAAATGT TCAAAAGCCT GGTAGGGGTA AGTGGGCTGG TCGCATCTTG
  ACCTGGCCTT TGGGGGCCTT CTGCATGACT TCTGCTGCTG GGAGAGTGGG TGAGGATGAA
  CTCCGCTGTC TGGGGCATCC CACTGCTGCT CTGGATGGGC GGAGCCTTCT CAGGTCCTGA
  CTGTGTGATG TGTGGTCGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss52253949	NES15255694	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs49399304					SNP	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52253949	NES15255694	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:43873983 () rs orientation: forward

Symbol	Name	Function Class
Crybg1	crystallin beta-gamma domain containing 1	within coordinates
Rr384605	regulatory region 384605	1008 bp downstream
Rr430903	regulatory region 430903	1211 bp distal
Tssr97483	transcription start site region 97483	1625 bp upstream
Tssr97484	transcription start site region 97484	667 bp upstream
Tssr97485	transcription start site region 97485	626 bp upstream
Tssr97486	transcription start site region 97486	612 bp upstream
Tssr97487	transcription start site region 97487	597 bp upstream
Tssr97488	transcription start site region 97488	545 bp upstream