rs49399921 SNP Detail

Summary

• ID
  rs49399921
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:3675665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTACCTTGT CTAGAAGGTC
  TGAGCCTCCC TCTCCCTTTT CTTCTTCCTG GTCCATTGTG TATCTCTCCT ATACTTTTCT
  CCTGGTCTCT GACCTGAGAA GGCCTTTTAA AAGGCTAGGG TGTAGGGGGA GGGGGAGCAG
  ATATCTTCCC CCATTCCCAA ATCCCCAGCT CATATCCCAT CTGCTCCCAC CAATGCTTAA
  R
  CCCCAGAAAG ATGATCTCTA GGTAATTGTT GATCCTGACT GACGCTGAGC TGGGTGTGGG
  TGTGGGTAGG GCAGTGCAGG TTTGAACCTC ACTAGACCCA GCCATGATCA CAGGACCTTG
  AGGAATGTCA AGTGGGAAGA AGTCAGTACA ATGTTGAAGA TCAACCAACA TGAGGGTGGA
  ACCTGCAGGA TGTCCCCACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61076608	NES16054576	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49399921					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61076608	NES16054576	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3675665 () rs orientation: forward

Symbol	Name	Function Class
Pcp2	Purkinje cell protein 2 (L7)	120 bp upstream
Pet100	PET100 homolog	1430 bp downstream
Tssr80204	transcription start site region 80204	1088 bp upstream
Tssr80205	transcription start site region 80205	998 bp upstream
Tssr80206	transcription start site region 80206	739 bp upstream
Tssr80207	transcription start site region 80207	682 bp upstream
Tssr80208	transcription start site region 80208	651 bp upstream
Tssr80209	transcription start site region 80209	623 bp upstream
Tssr80210	transcription start site region 80210	453 bp upstream
Tssr80211	transcription start site region 80211	412 bp upstream
Tssr80212	transcription start site region 80212	377 bp upstream
Tssr80213	transcription start site region 80213	368 bp upstream
Tssr80214	transcription start site region 80214	117 bp upstream
Tssr80215	transcription start site region 80215	85 bp upstream