rs49399987 SNP Detail

Summary

• ID
  rs49399987
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148530896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTG GGAGTCAGAG ACAGGTCACA
  R
  ATAGGAGGCC CTAAGAAATT CCTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148007760	ENSMUSSNP5614322	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321420479	CHEV_4_147820548	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49399987					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148530896 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15303	CpG island 15303	1433 bp distal
Cpgi15304	CpG island 15304	1682 bp proximal
Gm69484	predicted gene, 69484	493 bp downstream
Rr398858	regulatory region 398858	1873 bp upstream
Rr604684	regulatory region 604684	1683 bp distal
Rr604685	regulatory region 604685	1178 bp distal
Rr604686	regulatory region 604686	1682 bp proximal
Tssr44605	transcription start site region 44605	1940 bp upstream
Tssr44606	transcription start site region 44606	1700 bp upstream
Tssr44607	transcription start site region 44607	1656 bp upstream
Ubiad1	UbiA prenyltransferase domain containing 1	1679 bp upstream