rs49400006 SNP Detail

Summary

• ID
  rs49400006
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88187400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTGG CTGTGGGCTA ATGGGGGAAG
  R
  AGGAGTAGCT GGGCCTAGAG AGAAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	SPRET/EiJ
ss914782376	MGP_WTSI_1_88259678	EVA_MGPV3	EVA_MGPV3	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	SPRET/EiJ
rs49400006					SNP	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss914782376	MGP_WTSI_1_88259678	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88187400 () rs orientation: forward

Symbol	Name	Function Class
Mroh2a	maestro heat-like repeat family member 2A	within coordinates
Rr18061	regulatory region 18061	400 bp distal
Rr35066	regulatory region 35066	within coordinates
Tssr7958	transcription start site region 7958	553 bp downstream
Tssr7959	transcription start site region 7959	533 bp downstream
Tssr7960	transcription start site region 7960	510 bp downstream
Tssr7961	transcription start site region 7961	481 bp downstream
Tssr7962	transcription start site region 7962	321 bp downstream
Tssr7963	transcription start site region 7963	291 bp downstream
Tssr7964	transcription start site region 7964	264 bp downstream
Tssr7965	transcription start site region 7965	240 bp downstream