rs49400050 SNP Detail

Summary

• ID
  rs49400050
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:21876326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTAATTTA TTATATACTA
  GGCTGCATTC GTGAAATGAC TTGTATTAAT TTGGACTATC TTGAAATACA CTTATATCGC
  TCCATCAATT TAAAGAGATT ATTTTTCTAG ATGCAACAAT ATGCTTGATG GTGACTTTCC
  CTTTAAACTT CCAATATGGT CTCATGTTGT CTTGGTTTTG GGATCATTGA CAGGATTCCT
  M
  ATAGTATTCT GATGTTTGAA TCTTGTTATG TGCTTTGACA CTATTTTTTA GTAGATTTCA
  GTATTGATTT CTGCTTTTTC TTTTTCTTTT TGATCCCTTC TATGAAAGGA CCACAAACCA
  GCTATTCATT GTTCCTAAAA GAGAAATTAA GAGAAGAGAA GAGAAACAGA AATGGATAAT
  TTTCCAGTAA ACATGTCCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60549943	NES16568164	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	A	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs49400050					SNP	C	C	C	C	A	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60549943	NES16568164	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:21876326 () rs orientation: forward

Symbol	Name	Function Class
D17Jcs131	DNA segment, Chr 17, John C. Schimenti 131	957 bp proximal
Zfp983	zinc finger protein 983	within coordinates