rs49400077 SNP Detail

Summary

• ID
  rs49400077
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191473382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATGATCCT GACCCTCCTG
  CATCCACTTC CCAAGGGCTG ACTACAGATT TAGACCACAA CAACCATCTC CTCTGATTCT
  TGTTCGCACT CTGTACCCAG GCTGGACTGA GTCACAGTTG TAAGCTACCA GCGGGCTCGC
  TCCTTCTTAG TTTTAGTTCT CTCTTTAAGT CAGTCAGATG ATGCTAGTGT GAAAAATCAT
  Y
  TTTGAGGAAG TCTTTCTGGG AACCTGTAGC TTGCTCTATT GTGGACTGGC AATCCACCAA
  GTTAGTACAG CTAACCTCTG GATTATCTTT CCCACTTTCC TGGGAAGCCA CCAGATTGTT
  CAGAGGGCTT TTCAAAGTTT GAATAGAATA TTGTGGAGAT ATGTGTGACT CCCAACCTGT
  CCTCCCTGTT GCTTCTTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60360921	NES15859680	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49400077					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60360921	NES15859680	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191473382 () rs orientation: forward

Symbol	Name	Function Class
Lpgat1	lysophosphatidylglycerol acyltransferase 1	within coordinates
Tssr10784	transcription start site region 10784	1845 bp upstream