rs49400133 SNP Detail

Summary

• ID
  rs49400133
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137177278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGA GAAACCCTTT TCATAAATAA
  R
  AGAGAGGTGG AGGTGGAAGA CAGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss144526842	ENSMUSSNP3036549	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321701912	CHEV_5_137624301	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49400133					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137177278 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1677	transcription start site region 1677	829 bp downstream
Tssr49309	transcription start site region 49309	1348 bp upstream
Tssr49310	transcription start site region 49310	1708 bp upstream
Tssr49311	transcription start site region 49311	1722 bp upstream
Tssr53917	transcription start site region 53917	1724 bp upstream
Tssr53918	transcription start site region 53918	1664 bp upstream
Tssr53919	transcription start site region 53919	1208 bp downstream
Tssr53920	transcription start site region 53920	1224 bp downstream
Tssr53921	transcription start site region 53921	1379 bp downstream
Tssr53922	transcription start site region 53922	1420 bp downstream
Tssr53923	transcription start site region 53923	1461 bp downstream
Tssr53924	transcription start site region 53924	1475 bp downstream
Tssr53925	transcription start site region 53925	1513 bp downstream
Tssr53926	transcription start site region 53926	1544 bp downstream
Tssr53927	transcription start site region 53927	1693 bp downstream
Tssr53928	transcription start site region 53928	1711 bp downstream
Tssr53929	transcription start site region 53929	1748 bp downstream
Tssr53930	transcription start site region 53930	1813 bp downstream
Tssr53931	transcription start site region 53931	1838 bp downstream
Tssr53932	transcription start site region 53932	1854 bp downstream
Tssr53933	transcription start site region 53933	1892 bp downstream
Tssr53934	transcription start site region 53934	1924 bp downstream
Tssr53935	transcription start site region 53935	1975 bp downstream
Tssr53936	transcription start site region 53936	1996 bp downstream