rs49401799 SNP Detail

Summary

• ID
  rs49401799
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:3283838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAATATTC ACATCAATTG
  AGCAAAAATG TCTTGTTTTC TATGAATAAG CACAATTTTA ATGTATTCTA ATTTGTCTAA
  TTACTAATAC ACCTGTACAC TAAAAAAATA CACTATTATT GTTACTAGCA CAGAGTAGAA
  CTCTCAGGCA GTCAAGATTA ACTCTTTTCT GTGTTAAATC ACTTTTCTTC CTGCTATAAC
  R
  CCTTGTACAG GTTTCTTCAT AATGTGCTTA TGAAAATACA TCAAGATAAT GAAATGCAGT
  GTATACAACT AAAGAACATA CAATAAGATC CTTATTGCAT TTAGAAATTC ACATCAATTA
  AGTGAAAATG TCTTGTTTTC TTTGAATAAA AAGAGTTATA ATGAATTCTA ATGTGTCTAA
  TTACTAGTAC ACCTGGTCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	LG/J	SM/J
ss52277074	NES15359505	PERLEGEN	MM_PANEL2	f	SNP	A	G
ss323871530	CHEV_12_3233838	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	LG/J	SM/J
rs49401799					SNP	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52277074	NES15359505	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:3283838 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4353	CpG island 4353	1087 bp proximal
Gm60416	predicted gene, 60416	within coordinates
Rab10os	RAB10, member RAS oncogene family, opposite strand	1953 bp upstream
Rr265316	regulatory region 265316	962 bp proximal
Tssr112476	transcription start site region 112476	1651 bp upstream
Tssr112477	transcription start site region 112477	1896 bp upstream
Tssr112478	transcription start site region 112478	1964 bp upstream
Tssr115578	transcription start site region 115578	1452 bp downstream