rs49401863 SNP Detail

Summary

• ID
  rs49401863
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45014018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTTACCT GGCAGCTCAC
  AATGGTCTAA TTCCAGTTCC AGAGGACCTG GCACCCTTGC ATAAACATAT ATGCAGACAA
  AACACTAATG CACATAAAAT AAAAATAATT AATTAATTAA AAAAAAGACT GTGCACACTA
  GAGTTCCAAA GAATACTAGA CTATTTAATT GAAAATGACA CATTCTGCAA GTTAGAATAT
  S
  CTGGGAAGAA GGGAATCTAG AACATCAGCA GACGTGGCCC GAACATAAAA CACATCTACA
  ATGGAAACTC AGCAGATACT AGTCTTTAAG GGTGGGCATA AAGTGAGCCC TTTTTGTAAT
  TGGTCAAGTG CTAGTAATTG AAGCCTGGCC TTTGTGCATG TGAGGTAAGT GCTCTGCCCC
  AGCAACAACC CCAGCCCCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss61003695	NES16117436	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs49401863					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61003695	NES16117436	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45014018 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19049	CpG island 19049	1449 bp proximal
Mtag2	metastasis associated gene 2	1567 bp upstream
Ppfia3	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3	within coordinates
Rr646418	regulatory region 646418	1353 bp distal
Rr646419	regulatory region 646419	1102 bp proximal
Rr646420	regulatory region 646420	1424 bp proximal