rs49402808 SNP Detail

Summary

• ID
  rs49402808
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:67146272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGTG GAGAGGTCTA ACGCTGCCTG
  Y
  GCTGCGCTTG ATAAGAAGCA GAGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132326655	ENSMUSSNP6288649	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss323719240	CHEV_11_67068948	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49402808					SNP	C	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67146272 () rs orientation: forward

Symbol	Name	Function Class
Myh4	myosin, heavy polypeptide 4, skeletal muscle	within coordinates
Rr449442	regulatory region 449442	1460 bp distal
Tssr3528	transcription start site region 3528	703 bp downstream
Tssr3529	transcription start site region 3529	647 bp downstream
Tssr102201	transcription start site region 102201	1928 bp downstream
Tssr102202	transcription start site region 102202	1439 bp downstream
Tssr102203	transcription start site region 102203	1376 bp downstream
Tssr102204	transcription start site region 102204	980 bp downstream
Tssr102205	transcription start site region 102205	763 bp downstream
Tssr102206	transcription start site region 102206	659 bp downstream
Tssr102207	transcription start site region 102207	6 bp downstream
Tssr102208	transcription start site region 102208	145 bp upstream
Tssr102209	transcription start site region 102209	180 bp upstream
Tssr102210	transcription start site region 102210	198 bp upstream
Tssr102211	transcription start site region 102211	208 bp upstream
Tssr102212	transcription start site region 102212	230 bp upstream
Tssr102213	transcription start site region 102213	382 bp upstream
Tssr102214	transcription start site region 102214	738 bp upstream
Tssr102215	transcription start site region 102215	752 bp upstream
Tssr102216	transcription start site region 102216	796 bp upstream
Tssr102217	transcription start site region 102217	950 bp upstream
Tssr102218	transcription start site region 102218	1661 bp upstream
Tssr102219	transcription start site region 102219	1748 bp upstream
Tssr102220	transcription start site region 102220	1787 bp upstream
Tssr108536	transcription start site region 108536	1392 bp upstream
Tssr108537	transcription start site region 108537	1371 bp upstream
Tssr108538	transcription start site region 108538	861 bp upstream
Tssr108539	transcription start site region 108539	663 bp upstream
Tssr108540	transcription start site region 108540	605 bp upstream
Tssr108541	transcription start site region 108541	within coordinates
Tssr108542	transcription start site region 108542	150 bp downstream
Tssr108543	transcription start site region 108543	265 bp downstream
Tssr108544	transcription start site region 108544	848 bp downstream
Tssr108545	transcription start site region 108545	1780 bp downstream