rs49403819 SNP Detail

Summary

• ID
  rs49403819
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153337412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTATTTC TCAGAAATAT
  ATGTAATTTA TGCTAACATG AAATGGGTTC GTTTGGTTTT TTTTTAAACA AATTAACATT
  TTTATATCCT GCCAGCCTCA ATTTCTAGTA CTATTCAGTG GATACAACTC CTGTAAGGAA
  AAGCTTTTCT CAGTACCTTC TTTTTTAGAG AATGTAAGAT GGTTTATGCC TTGGAAAAGA
  R
  AAGTCCTCCC AAAAGCTTAG GGTTGAGTGG TTGGTTCACA ACTGGCAGTG CCCCGTGGAA
  GGATCTGGAA GTTTAGGATA CGAGACTTAG CTGGAGAATA TAGATCATGC AGTGTAGTCA
  AAGCCCACCC ATGTCCAGAG CCCTCTCCCT CTGCAGGGAC CCCATCCAAC CCTTCTTTGC
  TGTCTCTCCT CATCTAAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136110134	ENSMUSSNP1540238	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49403819					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153337412 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587712	regulatory region 587712			257 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant
Tssr32432	transcription start site region 32432			846 bp downstream
Tssr36231	transcription start site region 36231			650 bp upstream
Tssr36232	transcription start site region 36232			1690 bp downstream
Tssr36233	transcription start site region 36233			1742 bp downstream