rs49404186 SNP Detail

Summary

• ID
  rs49404186
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:52122022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAATATGC TTTGAAGGCT
  TGCCACAAAT GACTAAAGGC TAAGCTAGAC AGAAAAGGCT GCAGAATTCC AAGTGTTTTG
  GAAACAGAAG CTTTGCTTTT CCAGTCACTT CTTTTTGTTG TGTAACAGGT TTTTCTGGAG
  ATGTAGTCAC TGGTCCAGAG ATAAGGACTG AGCAGGAATA AATGTTCTAA AATACATACC
  Y
  GAATTCTCAC TCTCAGGCTA CATAGTTAGT GAATTCTATG AATATTGATT TTCAGAAAAA
  AGTAGAAATC AATACGTTAC TAAAAGTTAT AGTTTAGGCG CCCAGCCCTC TACTAGACAG
  ATTAAGATAT AGTTCTGGGT AGAAAATTGC ACTTTATCAC ACATGATATC CTTGCCTTAG
  TCTATAGACC ACACGCGGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60215888	NES15722295	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49404186					SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60215888	NES15722295	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:52122022 () rs orientation: forward

Symbol	Name	Function Class
Alcam	activated leukocyte cell adhesion molecule	within coordinates
Rr327240	regulatory region 327240	834 bp proximal
Rr328951	regulatory region 328951	57 bp proximal
Tssr141422	transcription start site region 141422	275 bp upstream
Tssr141423	transcription start site region 141423	239 bp upstream
Tssr141424	transcription start site region 141424	96 bp downstream