rs49404549 SNP Detail

Summary

• ID
  rs49404549
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52655259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGATAGCC GGCCAGTTGA
  GAGCACCTGC CGTCCTCGCA GAGGACCTGA GTCCAACTCT CAGTATGTGG CTACACATAG
  TGTGAATATA TACATTTTTT TTTAAAGTCG TCTTTAAATG CCTTGACTTG TGGCTTTCTT
  TTAACTCTGT TAGTATTAAA ACTCCATATG ACCATTTTTG AACACAAGAA TTGAGGTGAA
  C
  CTGAATCTAT GCTTTTTGGG TCATGGCTAC TCATATTTGG CTCCAGAAAT GTCTCTTACT
  ACCCTTGAGG TGAGAGCTGT GTTCTTGCTT TGACACTGGT GTGAGATCTT CATTGTGCAT
  AGAGTTTTCT CACAGTAAGC ACTTCACTTA ATTTGTAGTG AATGTGCCAT TGGACGTGCC
  AGATGGGGGA AGCTGTCATA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss137738429	ENSMUSSNP7228653	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs49404549					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52655259 () rs orientation: forward

Symbol	Name	Function Class
Gm35239	predicted gene, 35239	within coordinates
Tssr113445	transcription start site region 113445	833 bp downstream