rs49406679 SNP Detail

Summary

• ID
  rs49406679
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:26680477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATCTTGCT GAGAAAAAAT
  AGGTTAGCTG TCACTGTGGG GTTTACAGAG AAAATGTAGG ACATGGAGAT AAATTTGCAT
  TTCAGACAAA CCAGTAATAA ATTTTAGTAT AAGTATGTCC CATATGGTGT TTGAAATATC
  CATACCAAAA AGTATTCAGT GTTCACCCAA ATTCAAATTT GACTACATAG CTTATTGTTT
  Y
  CCTCATTAAA TCCCAGCTGT GAGAAATTTC AAAAGTCACC TTTATTGCCA GTCCCACACA
  TGTATGGTCT ATGGTTTTGG TATGGTCGCA TGTAGTTGAG CCTGGATTGG AACTACACTC
  CAACTCCTAA GTATTAGGAT TGCAGGAGTA TACTACCATG CCAAGTTTCT GTGGTGCTGG
  TGATTGGACA AAGGGCTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134696786	ENSMUSSNP7035276	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49406679					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26680477 () rs orientation: forward

Symbol	Name	Function Class
Gm55656	predicted gene, 55656	17 bp upstream
Gm65182	predicted gene, 65182	within coordinates