rs49406890 SNP Detail

Summary

• ID
  rs49406890
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:113017991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATGGAAAC CACACAGAGC
  AGGGCGACAT GATGACAGGT CAGCTGCTAG AAGATTCTCG TTTGGAGGAA TGTGTAGCAC
  CAGGCTTCTC TACTGGGACT GCAGACTACA TATGCATCTT AAGACCTGAG CAGATGGAAC
  TGTCTCTTCT TCCTAGGTTT TGTAAAAATT TTATCTTGTC CTCTCCTAGC TTTGGCATTC
  W
  GAGCCCCGTG TCTCCAGGAA AGGCAGGCTA CTTGGGAGTT TTGGGTTGTC AGCACAGGAA
  GAATGTCAGG GCAGATAAAT TAAGTATCTT GAAATTATAC TTATAAGTGT CCATCTGCGA
  CATGTTCCTG AACTAAAGTC TTAAGTTTAA TATGAATTCT AGAATTACAG AAGTTTTTTT
  TCACCATAAG GGACACATTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61457032	NES16836256	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49406890					SNP	T	T	T	T	T	T	A	T	T	T	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61457032	NES16836256	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:113017991 () rs orientation: forward

Symbol	Name	Function Class
Gm4657	predicted gene 4657	within coordinates
Rr383929	regulatory region 383929	1993 bp upstream