rs49406931 SNP Detail

Summary

• ID
  rs49406931
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:44588762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CATGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGCGCACA TGCCTATGCC TATAGGCACA CAGATGGGGT TGTGTGTGTG TATACACTTG
  Y
  GCTTGCTTGG ATGGAAGTGT GTACTGATAG CCCCATCATC TGTCAGAGTT ACTTGAGTTC
  TTCTGTTTAG AACTCTGTAG AATGTGGGAA ACGACTTATG G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132083699	ENSMUSSNP5787918	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49406931					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:44588762 () rs orientation: forward

Symbol	Name	Function Class
Ebf1	early B cell factor 1	Intron
Rr445670	regulatory region 445670	418 bp distal
Tssr101056	transcription start site region 101056	1091 bp upstream