rs49408065 SNP Detail

Summary

• ID
  rs49408065
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98851997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTATGTTT AGAATCTTTT
  TGGAAAATTC CAGCTTTTCA TTTTTAATAT ACTGAATTTA ATTACGTTCT GTCAGAATTC
  AACATCTCTA TTTGCTTTAA AAAGTAGCAG AAGATACGGG GGTGGTCAAA AAGGCGTGGC
  TGAATGTTTA GTTTCATAGT TATTGTATTA TTGTTATTCT TTATTATTAT TTGAGCAAAA
  K
  TCAGTACGAG TAGACCACGC CTGTGACCTC AACAGCACCT GGGAGTCAGA GGCAGGAAGA
  CTTGCAGCTC AAGGTCATCT TAACTGGCCT TAGTGGTTTA TTCCTGTGTA TCCCAGCACT
  GGGAAGCCGG GGATTGCAGC TAATTTGTGC CCACCCTGGA TATATAGTGT GATATCCTGT
  CTCAAAAACC AAAAGAAAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63622727	NES17045898	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49408065					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63622727	NES17045898	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98851997 () rs orientation: forward

Symbol	Name	Function Class
B430209F14Rik	RIKEN cDNA B430209F14 gene	1265 bp upstream
Cpgi7685	CpG island 7685	400 bp distal
Gm49450	predicted gene, 49450	565 bp upstream
Gm56698	predicted gene, 56698	449 bp downstream
Rr370012	regulatory region 370012	789 bp downstream
Rr404613	regulatory region 404613	345 bp downstream
Rr509236	regulatory region 509236	849 bp distal
Rr509237	regulatory region 509237	576 bp distal
Rr509238	regulatory region 509238	456 bp distal
Rr509239	regulatory region 509239	within coordinates
Rr509240	regulatory region 509240	1078 bp proximal
Tssr132970	transcription start site region 132970	1042 bp downstream
Tssr132971	transcription start site region 132971	347 bp downstream
Tssr136334	transcription start site region 136334	597 bp upstream
Tssr136335	transcription start site region 136335	583 bp upstream
Tssr136336	transcription start site region 136336	556 bp upstream
Tssr136337	transcription start site region 136337	525 bp upstream
Tssr136338	transcription start site region 136338	509 bp upstream
Tssr136339	transcription start site region 136339	457 bp upstream
Tssr136340	transcription start site region 136340	440 bp upstream
Tssr136341	transcription start site region 136341	417 bp upstream
Tssr136342	transcription start site region 136342	1343 bp downstream
Tuba1a	tubulin, alpha 1A	615 bp upstream