rs49408109 SNP Detail

Summary

• ID
  rs49408109
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:11449774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAAGCACA CACCCTTGTT
  GCACCTGCAG ACTGTATCAT TAGAGAGTCA TGCAGTTGTA TGTGCTTGTC ATACAGGCGC
  ATTCCATGTT CCTTCCACAG TGCTGTGCTC TCAACTGACT TAGACCTTCC ACTGTGTGTC
  TGTGCTCTGC TGTGTGGACA GATTTCTGCA GCCAGGAAAC AGGCTTCGCT TTGTGTTCTT
  R
  TACCCATGCG GTCTGCTGGG ATGGAGCTTT TCATTGCTCA TTTTTGATTG TTTTTGTTAG
  GTAGATTGGT TTGAGGAGCA TCTGTGTAGG ACGAGTCACA GGCAATTGTT TGTTGTTGTA
  GGGCTGACCT GTGAATTCTG GGATCCCTGC CTTTTTTTTT TTTTTTTTTT TTAACTAGAG
  GAGTACTAAT TGCATCTCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52596357	NES15695635	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49408109					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52596357	NES15695635	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:11449774 () rs orientation: forward

Symbol	Name	Function Class
Gm59955	predicted gene, 59955	156 bp downstream
Rr511811	regulatory region 511811	1001 bp distal
Snx29	sorting nexin 29	within coordinates
Tssr137107	transcription start site region 137107	171 bp upstream
Tssr140027	transcription start site region 140027	1261 bp downstream