rs49408558 SNP Detail

Summary

• ID
  rs49408558
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180829668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GTCCAGCAGC AGCTCCGGCG GAAGTGCCGA GTACCCTGGG GACGCCGTGC
  C
  CCAGTCCCCG GGTAAGTGCA GAACCAGCCA GCGGAAGGGC AGAGTTCACG           
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss148398588	ENSMUSSNP1867618	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs49408558					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180829668 () rs orientation: forward

Symbol	Name	Function Class
C330003G01Rik	RIKEN cDNA C330003G01 gene	152 bp upstream
Cpgi12916	CpG island 12916	within coordinates
Gm75115	predicted gene, 75115	162 bp upstream
Gm75119	predicted gene, 75119	1259 bp upstream
Ppdpf	pancreatic progenitor cell differentiation and proliferation factor	within coordinates
Rr374383	regulatory region 374383	within coordinates
Rr572939	regulatory region 572939	529 bp distal
Rr572940	regulatory region 572940	578 bp distal
Rr572941	regulatory region 572941	173 bp distal
Rr572942	regulatory region 572942	within coordinates
Rr572943	regulatory region 572943	769 bp proximal
Rr572944	regulatory region 572944	1270 bp proximal
Tssr22287	transcription start site region 22287	528 bp downstream
Tssr22288	transcription start site region 22288	456 bp downstream
Tssr22289	transcription start site region 22289	280 bp downstream
Tssr22290	transcription start site region 22290	257 bp downstream
Tssr22291	transcription start site region 22291	223 bp downstream
Tssr22292	transcription start site region 22292	67 bp downstream
Tssr22293	transcription start site region 22293	2 bp upstream