rs49409268 SNP Detail

Summary

• ID
  rs49409268
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:42404766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTTGGCA GACGTGCCTT
  TACCCCCTGA TCCATCTTGC CAGCCCATAA CTACGCCTGC TCTCTTTTGA AAGTTGAAAG
  CTGCCCAGAC TAGCATCCAA CTCACCTTGT AGCCCAGCCA GGTTTGTCTT TCAGCTCCCG
  TGCCATTGTA CCGTATGTGC AGCATTTCAT TCTCCTTCCT GCCCTCAGTG TGAGCAACCC
  W
  CGGCTCTCCG GTGCTGCTTA TCACTCTTAG CCGTGTTGGT CGCGTAGGGA GTGAGTGGAT
  CACTGGGCTT TTGGTGTCCA TTTGGTGGCC AGTGTTGCTG CTGACCTTTT TTTCATTTAC
  TCCTTGAGTC TGTGCTCTTT GGAGAAAAGT GGACTGAGAT ATTTTGTCTG TTTAGTTGGG
  CTGCCTTTTT ATTATGTTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss61273594	NES16777577	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs49409268					SNP	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61273594	NES16777577	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:42404766 () rs orientation: forward

Symbol	Name	Function Class
Rr219442	regulatory region 219442	766 bp distal
Rr219443	regulatory region 219443	1835 bp proximal
Snx3	sorting nexin 3	within coordinates