rs49409554 SNP Detail

Summary

• ID
  rs49409554
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:78069108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGACAGC ACATCTCACA
  GCTCTGAGAT CAAAAACTCA AGAACAGAGG CATTGCCTAC TGAGGTTTCC TGATCCTCTT
  TGTTCTGTGT CTTCCATCGC GGAAGGGAAG GGGTGAGGAG TTCTTGGTCT CTTTGGTAAA
  AATACTAATA ACCTTTAGTA GGGGTTCTGG CCCAGCATTC CTGAGACTTC ACGTTAGCCT
  R
  TGAAGGAGGG CCACAGTACA TACAAGTACA GTGGAGGTGG AAGGTGATTC TCAGCAGGTC
  AAGGCCAAGC AGCTGGTGGG AGTCCAAAGG CCTGGCCCCA CCCTCTTCAG GAGCAGCATT
  TGGACCTGGA GACTTGTCTT AGGAGACAGC TCTCCAGAAA GCGCCCCTTT GCTGTCTATC
  CCTCCTGGTT CCTAGAACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52382225	NES15267157	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49409554					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52382225	NES15267157	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:78069108 () rs orientation: forward

Symbol	Name	Function Class
D10Mit139	DNA segment, Chr 10, Massachusetts Institute of Technology 139	469 bp distal
D10Mit139.1	DNA segment, Chr 10, Massachusetts Institute of Technology 139.1	388 bp distal
Trappc10	trafficking protein particle complex 10	within coordinates
Tssr98271	transcription start site region 98271	1462 bp downstream