rs49409906 SNP Detail

Summary

• ID
  rs49409906
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:25189978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATG CCATCAACAA GTCTCAGATA
  Y
  GACAGGCAGA CAGCCACAAT TCGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148110887	ENSMUSSNP6179204	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49409906					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:25189978 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1500035N22Rik	RIKEN cDNA 1500035N22 gene			862 bp upstream
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6			within coordinates
Prkag2	protein kinase, AMP-activated, gamma 2 non-catalytic subunit			Intron
				Noncoding-Transcript-Variant
Rr608457	regulatory region 608457			971 bp distal
Rr608458	regulatory region 608458			1363 bp distal
Rr608459	regulatory region 608459			1226 bp distal
Rr608460	regulatory region 608460			338 bp proximal
Rr608461	regulatory region 608461			890 bp proximal
Tssr45452	transcription start site region 45452			860 bp upstream