rs49410140 SNP Detail

Summary

• ID
  rs49410140
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17691731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCAACTTTC AAGAAGCATC CCACTAGTGA TTGGCAAAAT
  CATGAATAAA GCCCTATACC TAGTAGGCCT ATGCTGTAAT GGCCCACTAC TAGCCTCCTG
  R
  TGCTGCATCT TTCAGAAAAG GATGAGTGGT GTGATGGTCT GATGGAATTG GTGTGTCAAA
  AGAGGTCGTA CATCAATGGA ATCTCTGAAA AATCTGCTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133020590	ENSMUSSNP5995045	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss321756034	CHEV_6_17641732	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49410140					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17691731 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17178	CpG island 17178	1943 bp proximal
Gm55211	predicted gene, 55211	1694 bp upstream
Rr626833	regulatory region 626833	471 bp proximal
Rr626834	regulatory region 626834	1845 bp proximal
St7	suppression of tumorigenicity 7	1848 bp upstream
Tssr55085	transcription start site region 55085	1875 bp upstream