rs49410237 SNP Detail

Summary

• ID
  rs49410237
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:160761479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATGAAGAA AATACTCTTA
  TCAATTGAGC CATCCCAGCC CTCAGATCAG TTTTAATAGC CAATGACAGT TTGGGAGGCA
  GAGTCTGTAT GTTTGAGGTC AGCGTGGTCT ACATAGTTCC AGAACAACCA GAATTACATA
  GTGAAACTTG TCTCAAAAAC AAAACAAACA ACTAAAAATT CCAGTAACAA AGTCTAGCAT
  S
  CCAGTAATTT CTGTAAATTA GCACACACGA TTGGATATTC AAGGATATGT TACTATGTGT
  ACAGAAAATA GGAAGAATCC AGGGGAACTC ACAATATCAC CTCCAGAAGG CACTTAGCAA
  GAAACACAGA CAAATGACAT CCTTTCTTCC AAACTGTCTT AAGTTCATAC TGATAGTGTT
  TTCATTAGCG CCTCCCACAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60334367	NES15825956	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49410237					SNP	C	C	C	C	C	C	C	C	C	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60334367	NES15825956	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:160761479 () rs orientation: forward

Symbol	Name	Function Class
Rc3h1	RING CCCH (C3H) domains 1	Intron
Rr421728	regulatory region 421728	96 bp proximal
Rr421729	regulatory region 421729	109 bp proximal
Rr421730	regulatory region 421730	406 bp proximal
Rr421731	regulatory region 421731	643 bp proximal
Rr421732	regulatory region 421732	1819 bp proximal