rs49411880 SNP Detail

Summary

• ID
  rs49411880
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:29583169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAG CTGTGGTTTC TGTCAGGGCA
  Y
  TGGAGAGGGA GCAGGCAGTA CCCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61585709	NES17530503	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	C		T	C	C	C		C
ss323979701	CHEV_12_30218035	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49411880					SNP	C	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61585709	NES17530503	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:29583169 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4517	CpG island 4517	1579 bp proximal
Myt1l	myelin transcription factor 1-like	within coordinates
Rr464424	regulatory region 464424	1961 bp distal
Rr464425	regulatory region 464425	within coordinates
Rr464426	regulatory region 464426	1026 bp proximal
Rr464427	regulatory region 464427	1456 bp proximal
Rr464428	regulatory region 464428	1759 bp proximal
Tssr113063	transcription start site region 113063	110 bp upstream
Tssr113064	transcription start site region 113064	122 bp upstream
Tssr113065	transcription start site region 113065	181 bp upstream
Tssr113066	transcription start site region 113066	258 bp upstream
Tssr113067	transcription start site region 113067	281 bp upstream
Tssr113068	transcription start site region 113068	307 bp upstream
Tssr113069	transcription start site region 113069	1391 bp upstream
Tssr113070	transcription start site region 113070	1546 bp upstream
Tssr113071	transcription start site region 113071	1677 bp upstream