rs49411900 SNP Detail

Summary

• ID
  rs49411900
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:124018016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGTCCAAG GAAAGCAAGC
  TAGTAAACAG TGCTCACCCA TGATCTCTGT TTCAGTAACT GCCTCCTTGT TCTTACCTTG
  AGATCTGGTC TTCTTCTTCT GATGGACTGT AATTCATAAG TCAAATACAT AAATTCTCAT
  TGCAAACTGC TTTTGGCCAG TGTTTTTTTT TCACAACAAC ATAAAGCAAA CTAAGACAGT
  R
  TATTTTTTAT CCTTTTACAA AATACTGATA AAATATCTAT AACCTCTGTA ATTCTGTTTC
  TTCAGTATTT TTATGTCAAT TATGACTTTT TAAAAATGTT CCAAGTTCTA AGATTTTGTC
  TCAGAATAAC AAAAAAAAAA TAGGTTAAAC AAAAATAGTT AAAATATGTA CAACAAAATA
  AATTTATAAG ATAAAATTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60445871	NES15938730	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	G	A	A	G	G	G		A	G	G	G		G
ss135782535	ENSMUSSNP4143999	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G
ss320926389	CHEV_3_123927285	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49411900					SNP	G	A	G	A	G	A	A	G	G	G	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60445871	NES15938730	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:124018016 () rs orientation: forward

Symbol	Name	Function Class
Rr584579	regulatory region 584579	1812 bp proximal