rs49412359 SNP Detail

Summary

• ID
  rs49412359
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:7352099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAAAGAGTG GTGCAATTAA AGATCTCTAA ATTCCTATAA
  CAGAGGATTG CTCTGACAAA ACTTATCTAG CCTATAATGT CAACAAAATT GAGCCTGAGA
  R
  ATGTTCTTTG AAAGAGTAGG GGAATTAAGT AAAGGATTCT CAAATGTTCC CTTTTAATGT
  GTTGTCAGAC ATTGTATTAT CTTCTTCAAT GACAAAGCAA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60680462	NES16229757	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49412359					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60680462	NES16229757	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:7352099 () rs orientation: forward

Symbol	Name	Function Class
Mmp12	matrix metallopeptidase 12	within coordinates
Tssr2759	transcription start site region 2759	1444 bp upstream
Tssr83709	transcription start site region 83709	1982 bp downstream
Tssr83710	transcription start site region 83710	1465 bp downstream
Tssr83711	transcription start site region 83711	983 bp downstream
Tssr83712	transcription start site region 83712	114 bp downstream
Tssr83713	transcription start site region 83713	276 bp upstream
Tssr83714	transcription start site region 83714	448 bp upstream
Tssr83715	transcription start site region 83715	500 bp upstream
Tssr83716	transcription start site region 83716	771 bp upstream
Tssr83717	transcription start site region 83717	812 bp upstream
Tssr83718	transcription start site region 83718	832 bp upstream
Tssr83719	transcription start site region 83719	858 bp upstream
Tssr83720	transcription start site region 83720	887 bp upstream
Tssr83721	transcription start site region 83721	1139 bp upstream
Tssr83722	transcription start site region 83722	1341 bp upstream
Tssr83723	transcription start site region 83723	1465 bp upstream
Tssr83724	transcription start site region 83724	1786 bp upstream
Tssr83725	transcription start site region 83725	1910 bp upstream
Tssr83726	transcription start site region 83726	1999 bp upstream
Tssr88066	transcription start site region 88066	1976 bp upstream
Tssr88067	transcription start site region 88067	881 bp downstream
Tssr88068	transcription start site region 88068	929 bp downstream
Tssr88069	transcription start site region 88069	1376 bp downstream