rs49413196 SNP Detail

Summary

• ID
  rs49413196
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45569188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAA GTCTTCTCAG AATTTAGGGA
  R
  CTTTCTCCCC TGTTCCTTAA GCTAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61002551	NES16125174	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	G	G	G	G	G	G	G	G	G	G	G
ss149150473	ENSMUSSNP1325564	ENSEMBL	ENSEMBL_Sanger	f	SNP								G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49413196					SNP	G	A	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61002551	NES16125174	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45569188 () rs orientation: forward

Symbol	Name	Function Class
Emp3	epithelial membrane protein 3	Intron
Gm72819	predicted gene, 72819	1225 bp downstream
Rr400324	regulatory region 400324	1426 bp upstream
Rr646607	regulatory region 646607	1776 bp distal
Rr646608	regulatory region 646608	289 bp distal
Rr646609	regulatory region 646609	1077 bp proximal
Tssr66660	transcription start site region 66660	1711 bp downstream
Tssr72489	transcription start site region 72489	405 bp upstream
Tssr72490	transcription start site region 72490	392 bp downstream
Tssr72491	transcription start site region 72491	624 bp downstream
Tssr72492	transcription start site region 72492	863 bp downstream
Tssr72493	transcription start site region 72493	887 bp downstream
Tssr72494	transcription start site region 72494	911 bp downstream
Tssr72495	transcription start site region 72495	917 bp downstream
Tssr72496	transcription start site region 72496	936 bp downstream
Tssr72497	transcription start site region 72497	1066 bp downstream
Tssr72498	transcription start site region 72498	1347 bp downstream
Tssr72499	transcription start site region 72499	1497 bp downstream
Tssr72500	transcription start site region 72500	1654 bp downstream