ACCTGGTGTG GACCCTCTTT TTCCATAGTC CCTGAAGTAC CCTCTCCAGA GGTGACCCTC CTCAGCTTGG AACAGCTATG AGATGAAGCC CCTACTCGAG TACTTCTTGT TTGTTTGTTT TTGTTGTTTT CAGGGTCTGC CATGATAGAA TGCCCTGACT GCAGAAAACA AGAAGGCCCC TGAGTCACTC ACGATGTCCT M GCTCATCTGG GTTCAATTTG CCACATCTGT ATCTGTGAGA ACTGTTTGCA GAGGCAGGCA CTTTCTCACA AGAACCTACT TTGCTTGAGC GAGCATTTTC AAAAGCAAGG TGTTGTACAT TTCTCAGGAA TGTCTTTACC TGGGTAACCC TCCTCAGCTG CATCAACTTC CGAATCTGTA AACCTCTTAC CCACTCCCAT M = A/C Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss61647762 | NES17599208 | PERLEGEN | MM_PANEL2 | f | SNP | C | C | C | C | C | C | C | C | C | C | A | C | C | A | C |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs49413310 | SNP | C | C | C | C | C | C | C | C | C | C | A | C | C | A | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss61647762 | NES17599208 | PERLEGEN | MM_PANEL | f | SNP | A/C |
Location: Chr12:74057237 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Rr257359 | regulatory region 257359 | 437 bp distal | ||||||
Rr257360 | regulatory region 257360 | 364 bp proximal | ||||||
Rr261259 | regulatory region 261259 | 1364 bp proximal | ||||||
Rr264147 | regulatory region 264147 | 509 bp proximal | ||||||
Rr268150 | regulatory region 268150 | 437 bp distal | ||||||
Syt16 | synaptotagmin XVI | within coordinates |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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