rs49413310 SNP Detail

Summary

• ID
  rs49413310
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:74057237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTGGTGTG GACCCTCTTT
  TTCCATAGTC CCTGAAGTAC CCTCTCCAGA GGTGACCCTC CTCAGCTTGG AACAGCTATG
  AGATGAAGCC CCTACTCGAG TACTTCTTGT TTGTTTGTTT TTGTTGTTTT CAGGGTCTGC
  CATGATAGAA TGCCCTGACT GCAGAAAACA AGAAGGCCCC TGAGTCACTC ACGATGTCCT
  M
  GCTCATCTGG GTTCAATTTG CCACATCTGT ATCTGTGAGA ACTGTTTGCA GAGGCAGGCA
  CTTTCTCACA AGAACCTACT TTGCTTGAGC GAGCATTTTC AAAAGCAAGG TGTTGTACAT
  TTCTCAGGAA TGTCTTTACC TGGGTAACCC TCCTCAGCTG CATCAACTTC CGAATCTGTA
  AACCTCTTAC CCACTCCCAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61647762	NES17599208	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49413310					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61647762	NES17599208	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:74057237 () rs orientation: forward

Symbol	Name	Function Class
Rr257359	regulatory region 257359	437 bp distal
Rr257360	regulatory region 257360	364 bp proximal
Rr261259	regulatory region 261259	1364 bp proximal
Rr264147	regulatory region 264147	509 bp proximal
Rr268150	regulatory region 268150	437 bp distal
Syt16	synaptotagmin XVI	within coordinates