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rs49413310 SNP Detail
Summary
  • ID
    rs49413310
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr12:74057237 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACCTGGTGTG GACCCTCTTT
    TTCCATAGTC CCTGAAGTAC CCTCTCCAGA GGTGACCCTC CTCAGCTTGG AACAGCTATG
    AGATGAAGCC CCTACTCGAG TACTTCTTGT TTGTTTGTTT TTGTTGTTTT CAGGGTCTGC
    CATGATAGAA TGCCCTGACT GCAGAAAACA AGAAGGCCCC TGAGTCACTC ACGATGTCCT
    M
    GCTCATCTGG GTTCAATTTG CCACATCTGT ATCTGTGAGA ACTGTTTGCA GAGGCAGGCA
    CTTTCTCACA AGAACCTACT TTGCTTGAGC GAGCATTTTC AAAAGCAAGG TGTTGTACAT
    TTCTCAGGAA TGTCTTTACC TGGGTAACCC TCCTCAGCTG CATCAACTTC CGAATCTGTA
    AACCTCTTAC CCACTCCCAT                                            
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss61647762 NES17599208 PERLEGEN MM_PANEL2 f SNP C C C C C C C C C C A C C A C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs49413310 SNP C C C C C C C C C C A C C A C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss61647762 NES17599208 PERLEGEN MM_PANEL f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:74057237 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr257359 regulatory region 257359 437 bp distal
Rr257360 regulatory region 257360 364 bp proximal
Rr261259 regulatory region 261259 1364 bp proximal
Rr264147 regulatory region 264147 509 bp proximal
Rr268150 regulatory region 268150 437 bp distal
Syt16 synaptotagmin XVI within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory