rs49415230 SNP Detail

Summary

• ID
  rs49415230
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:62530918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTGTATCCC ATCACCCCCA CTCCAGCTAC TTAGCCCCCT
  GCTCCTTCCG GTTAAGGGCA GTGGTCACAC GCTCACCATG TCGCCACGTT GTAGATCGCT
  R
  GCAATGCCCT AAGGCCCCTG TCAGCAGAGA TCAAAACACA TCAGACCAAT CTTTCAGCTT
  GCTTGCAACG GAGAGGAACA GAGAGCAGGG GAACAAGGCA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61820802	NES17754158	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49415230					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61820802	NES17754158	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:62530918 () rs orientation: forward

Symbol	Name	Function Class
Gm3604	predicted gene 3604	within coordinates
Gm23855	predicted gene, 23855	1814 bp upstream
Gm48690	predicted gene, 48690	2000 bp upstream
Gm55564	predicted gene, 55564	133 bp upstream
Rr281523	regulatory region 281523	within coordinates
Rr403806	regulatory region 403806	within coordinates