rs49415600 SNP Detail

Summary

• ID
  rs49415600
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:26054650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCCAGCCTG GCCACAGAAG AGCATGGCAG AGGTGGTCAG
  ATGGGTACCC TGCCTACTCC AGACCACCTC AGGCAGTGTA ACTTAGCTGG GAGATAAGCC
  K
  TCAGAGTCAG TGGGCAGGTG CTGGGGGTAG GAGTGGAGAA GAGGCTCTGG AAGGCAAGGC
  TCACTTACCC GACATGCATG AACATGTAGG TGAGGAAGCG                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60255638	NES15703170	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49415600					SNP	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60255638	NES15703170	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26054650 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8785	CpG island 8785	1850 bp distal
Cpgi8786	CpG island 8786	859 bp proximal
Gm20683	predicted gene 20683	Intron
Gm56915	predicted gene, 56915	1179 bp downstream
Rhbdl1	rhomboid like 1	Intron
Rr523680	regulatory region 523680	1782 bp distal
Rr523681	regulatory region 523681	1396 bp proximal
Tssr146866	transcription start site region 146866	1433 bp downstream