rs49416498 SNP Detail

Summary

• ID
  rs49416498
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:86235463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGATCTCTC GTCTAAACTC
  AGAGAGTCCC ACTAGGTGAT GGGGCCTTCC CTGACCAGCA TGCCAAGTTC CTTTTGGAAC
  AAAGCAGAGC TTCCTGCAAA GCTCAAAAGT CTCAGGGAAT GCTGACTTGG CAAGGTAACT
  ACTTTAAAGG AAATGGAGTT TCCCCTGGCC GAATATGTTT TGTAATCCCA GATTTAAAGA
  Y
  GTTTTCCCTC ACTATCCAAT CAGGCATATT TACTAATTTA CTGCTCCCTG TCCACTGAAG
  GCCCTACTCA TGTTAATCGT TACCTGGGAC TCTCAGTCAA ACCTAGAACT TCTCGACATG
  GTAGGTTTTA CCAGCTAGCT GGCTTTGCGG ATTCTCTACC TCTGCCTTCC AAAGTATGGG
  TGGAACGCCA CGCAACCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60286290	NES15785369	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49416498					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60286290	NES15785369	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:86235463 () rs orientation: forward

Symbol	Name	Function Class
Gm30117	predicted gene, 30117	within coordinates
Rr532331	regulatory region 532331	269 bp proximal
Rr532332	regulatory region 532332	501 bp proximal
Rr532333	regulatory region 532333	1799 bp proximal
Tssr149724	transcription start site region 149724	528 bp downstream