rs49417580 SNP Detail

Summary

• ID
  rs49417580
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:8857622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGATGAC CTGAGTTTGG
  TTCCCAGCAC CCACATCAGG TAACTCACAA CCATAATAAC TTCAGCTCCA GGGGATCCTC
  TTCTGGACTG CACAGACCAA CACACATACA TGTCCACATA TCCATATATA CATAACCACA
  TAGTCACATA ACTAAAAAAT AAAAATATTT TAAAAAATTG TGTCTAGAGA TACGTCCTAA
  Y
  ACAAATGACC AATGTCTTGC TAACAAGGGT GTCAAGACAA TTAAAGCAGG AAAGAAAGGA
  TATTGCAACG CGATGATGCC ACAAATCGGA TATCCACATG TGTATAAACA CAAATATACC
  TAATACCATG ACACTCCTGT TACAGACAAT GCAAACAAGA AACTGTGAAG ACAACCTGTA
  GAATCGGAGG AACAAGATAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146769148	ENSMUSSNP6813624	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss323246152	CHEV_10_8701676	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49417580					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8857622 () rs orientation: forward

Symbol	Name	Function Class
Rr223851	regulatory region 223851	979 bp proximal
Rr223852	regulatory region 223852	1456 bp proximal