rs49417752 SNP Detail

Summary

• ID
  rs49417752
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26487914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAC TGTTAGCACA GTGGGAGAGA
  K
  TCCACAGCTG ACTCATTCTG AAGCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145398370	ENSMUSSNP1751425	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss325340472	CHEV_17_26405885	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49417752					SNP	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26487914 () rs orientation: forward

Symbol	Name	Function Class
Gm16580	predicted gene 16580	397 bp upstream
Gm50013	predicted gene, 50013	within coordinates
Luc7l	Luc7-like	within coordinates
Rr329962	regulatory region 329962	within coordinates
Rr337090	regulatory region 337090	within coordinates
Tssr143221	transcription start site region 143221	1320 bp upstream
Tssr143222	transcription start site region 143222	1412 bp upstream
Tssr143223	transcription start site region 143223	1450 bp upstream