rs49418073 SNP Detail

Summary

• ID
  rs49418073
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153622432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTTATTT GACATGTGTG
  AGTGTCTTTG TTTTGTTTGT TTTTTCGAGA CAGGGTTTCT CTGTGTAGCC CTGGCTGTCC
  TGGAACTCAC TTTGTAGATC AGGCTGGCCT CGAACTCAGA AATCCACCAG CCTCTGCCTC
  CCAAATACTG GGATTAAGGG CATGCGCCAC CACCACCCAG CTATGTGTGA GTGTTTTATC
  R
  GCATGTATGT CTATGTATTG TGGGTGTAGT GCCTAAGGAG GTCAGAGGAG AACATCAGAT
  CCTCTAGAAC AGTAGTTACA GTCGGTTGTG GGTTGCCATC TTGGCTGCTA GGAATTGAGT
  GCAGCTCCTC TGCGGGAGTT TTTAACTGCT GAGCCATCTC TCCAGCCCTG CCAGGTCCCT
  TTCAAGGCCA ATACAATTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320565079	CHEV_2_153606248	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49418073					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153622432 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12494	CpG island 12494	1158 bp distal
Efcab8	EF-hand calcium binding domain 8	within coordinates
Gm75501	predicted gene, 75501	779 bp upstream
Rr567738	regulatory region 567738	790 bp distal
Rr567739	regulatory region 567739	689 bp distal
Tssr20916	transcription start site region 20916	1277 bp downstream
Tssr20917	transcription start site region 20917	1261 bp downstream
Tssr20918	transcription start site region 20918	1233 bp downstream