rs49418134 SNP Detail

Summary

• ID
  rs49418134
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:14929880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGGC TGCGGGAGTT TCTGGACTGG
  R
  ATGAGGCTGG GAAAGGCTCG CAGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146046334	ENSMUSSNP418428	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss321047003	CHEV_4_14857027	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49418134					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:14929880 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14053	CpG island 14053	within coordinates
Gm11837	predicted gene 11837	mRNA-UTR
Gm68732	predicted gene, 68732	within coordinates
Rr589248	regulatory region 589248	19 bp distal
Rr589249	regulatory region 589249	within coordinates
Rr589250	regulatory region 589250	570 bp proximal
Rr589251	regulatory region 589251	807 bp proximal
Tssr36545	transcription start site region 36545	9 bp downstream
Tssr36546	transcription start site region 36546	739 bp upstream
Tssr36547	transcription start site region 36547	829 bp upstream