rs49418508 SNP Detail

Summary

• ID
  rs49418508
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115569250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACGCCCCAC CTCCAGTGTT GGTGAGGGAC GCAGCAACTA
  CTACTCTTTC TCTGTGAGTA CTAATCTTGG TACTTCTGGC TTTGGGGTGG AGCCGGGCCC
  Y
  TATCCTACCC CCAGATTGAA TGAGTCAGGG CTACAGTTAC CCACGGTGGC TTCTCTGAAA
  TCTAACTACT ATTTGACTCT GTGACACCCC CTTTTCCAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss149124654	ENSMUSSNP6689705	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321654896	CHEV_5_115881200	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49418508					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115569250 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16370	CpG island 16370	229 bp distal
Gm43231	predicted gene 43231	1716 bp upstream
Msi1	musashi RNA-binding protein 1	within coordinates
Rr618242	regulatory region 618242	1698 bp distal
Rr618243	regulatory region 618243	1582 bp distal
Rr618244	regulatory region 618244	369 bp proximal
Tssr48228	transcription start site region 48228	1674 bp downstream
Tssr48229	transcription start site region 48229	1656 bp downstream
Tssr48230	transcription start site region 48230	1623 bp downstream
Tssr48231	transcription start site region 48231	1578 bp downstream
Tssr48232	transcription start site region 48232	1508 bp downstream
Tssr48233	transcription start site region 48233	1484 bp downstream
Tssr48234	transcription start site region 48234	1457 bp downstream
Tssr48235	transcription start site region 48235	1421 bp downstream
Tssr48236	transcription start site region 48236	1199 bp downstream
Tssr48237	transcription start site region 48237	855 bp downstream
Tssr48238	transcription start site region 48238	562 bp downstream
Tssr48239	transcription start site region 48239	168 bp upstream
Tssr48240	transcription start site region 48240	816 bp upstream
Tssr48241	transcription start site region 48241	829 bp upstream
Tssr52797	transcription start site region 52797	1682 bp upstream