rs49420289 SNP Detail

Summary

• ID
  rs49420289
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:61564141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGCCAAGG TGGATTTACG
  ATCAAGTACA CGGAAGTCAA CACTAGAGAA GCCAATGCAT CTCCAGAACA CTCCTACTTG
  GAGCCCCGAA GTACAGTGTG GATGCAAACA GGAGGACTAA TGTCTCCTCA AAGGCTTCTA
  GCCTATCAAA CACCGACTTA CTTACTTATA CCTGTAAAAT TTTCAGTTTG GCTTTTTTTT
  W
  AAAGTATCTT AAAATGTGTA TTTGCTTGAA TGTATGGACT TATACACACA TGACTTGTAC
  CCACAGAGGC TACAAGAGAG CACCAGGCCC TGTGGGACTG GAGTTGTGAG CTGTCATGTG
  GGTGCTGGGA ACCGAACCTG GATACTGAGT GAGATGAGTA GCCAGAGCTC TAACCACAGA
  GCCAGCTGTC TCCCCAGCCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss62418765	NES17249504	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs49420289					SNP	A	A	A	A	A	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62418765	NES17249504	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:61564141 () rs orientation: forward

Symbol	Name	Function Class
Gm5461	predicted gene 5461	882 bp upstream
Gm62465	predicted gene, 62465	538 bp upstream
Rr289706	regulatory region 289706	260 bp proximal
Rr297339	regulatory region 297339	859 bp proximal
Tssr129059	transcription start site region 129059	798 bp upstream