rs49420451 SNP Detail

Summary

• ID
  rs49420451
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:36917781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G AGTAGTCTGC GGTGCCCGGA GCAAACGCTG CAGCTAAGAT
  CTAGGGGGAG GGGCGGAGGA AGGACAAAGT TCTAAATGCT GCAGTTTGAG GGCAGCCTTA
  R
  AATATCTTTG CTTTCTGCAT ATAAACTTTT CAGCCCTAGC TACCTAGGCA TCTTATTCCT
  CCCTTTACCT TTTGACCCCT CAAGATAGTA TCTTGCAGTA T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148879321	ENSMUSSNP6271713	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49420451					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:36917781 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5450	CpG island 5450	1464 bp distal
Cpgi5451	CpG island 5451	1004 bp proximal
Gm56572	predicted gene, 56572	1081 bp upstream
Nrn1	neuritin 1	Intron
Rr477393	regulatory region 477393	1571 bp distal
Rr477394	regulatory region 477394	within coordinates
Rr477395	regulatory region 477395	660 bp proximal
Rr477396	regulatory region 477396	1092 bp proximal
Tssr119271	transcription start site region 119271	1049 bp upstream
Tssr122097	transcription start site region 122097	459 bp downstream
Tssr122098	transcription start site region 122098	486 bp downstream
Tssr122099	transcription start site region 122099	564 bp downstream
Tssr122100	transcription start site region 122100	597 bp downstream
Tssr122101	transcription start site region 122101	619 bp downstream
Tssr122102	transcription start site region 122102	643 bp downstream