rs49420487 SNP Detail

Summary

• ID
  rs49420487
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:84854675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGGACAG CACTGGGTTC
  CTTCGTTTGT TTGTTTGCCT GCTTTTTGTT TTGTTCTCTT TTGTTTCTGA GATGGCGGTT
  TCTCCGCGTA GCCCTGGCTG TCCTGGGACT CACTCTGTAG ACCAGGCTGG CCTCTAACTC
  AGAGATCTGC CTGCCTCTGC CTCCCAGGTA CTGGGTTTAA AGGTGTGGGG CCCCACACTC
  K
  GTTTCAGCAC ACAATTCTTA AGCAGGAAAG CAAGGTTGCT GGAGAAGCCG TGCACGGAGA
  CAGCTTAGCA GGAGATGAGC GGGGACCAGC AGACTGGAGA AGGAGAAAGC AGATTCAGTC
  TTCTGGAGGC GCTGGGAGAT GCTCAGTCTT GGATGCCCAC GGGCATCCCG GGACCAGGGA
  AGAGGGCCAG ATGCTTTTTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61659995	NES17614189	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49420487					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61659995	NES17614189	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:84854675 () rs orientation: forward

Symbol	Name	Function Class
Ltbp2	latent transforming growth factor beta binding protein 2	within coordinates
Rr469729	regulatory region 469729	1432 bp distal
Rr469730	regulatory region 469730	763 bp distal
Tssr114362	transcription start site region 114362	864 bp downstream
Tssr114363	transcription start site region 114363	835 bp downstream
Tssr114364	transcription start site region 114364	807 bp downstream