rs49421401 SNP Detail

Summary

• ID
  rs49421401
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108639720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGATTAGTGT CTCCTGAGAG CTCAGTGCCA ATCTAGCCCC
  TGGGAGCTCG CTCTGGCTTC TGACTCTTCT GTTACCATTC ATTTTTCACA GTCACTGGGC
  R
  GGGGTGGGGG GGGGGGAGAT GCTCTTCTGA TTCTTTCCTA AAAGGTCATA TTTTGCCATA
  CGGAATGCTG CTGTGCGCCA CCTGAAATGA GTCCATGTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133506703	ENSMUSSNP7066602	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49421401					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108639720 () rs orientation: forward

Symbol	Name	Function Class
0610040F04Rik	RIKEN cDNA 0610040F04 gene	1825 bp upstream
Bhlhe40	basic helix-loop-helix family, member e40	within coordinates
Cpgi17812	CpG island 17812	1026 bp distal
Rr399817	regulatory region 399817	877 bp downstream
Rr636156	regulatory region 636156	1875 bp distal
Rr636158	regulatory region 636158	1335 bp distal
Rr636159	regulatory region 636159	772 bp distal
Rr636160	regulatory region 636160	821 bp proximal
Tssr58076	transcription start site region 58076	1972 bp downstream
Tssr58077	transcription start site region 58077	1893 bp downstream
Tssr58078	transcription start site region 58078	982 bp downstream
Tssr58079	transcription start site region 58079	763 bp downstream
Tssr58080	transcription start site region 58080	416 bp downstream
Tssr58081	transcription start site region 58081	11 bp upstream
Tssr58082	transcription start site region 58082	360 bp upstream
Tssr58083	transcription start site region 58083	1980 bp upstream