rs49421478 SNP Detail

Summary

• ID
  rs49421478
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135662593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCCTTGGG TTTCACCCAT
  TCCCCGCTTC CCCCCCCCCC CCCCCCCGCC CATGTTCCTG CTTCCCTGGA GCCCTGTTGG
  ATATGAGCCC CTGACACAGG GCCAGGGAGA ACAAGGAGAA GCCTGTATGG AGCTGTGGGT
  CTCCCCCAGC GGGAGAAGGG CTTTGTGTCT AAACAAAACA CTGCTTGGGC CGGCTTCCCA
  Y
  CACGTGGCTA AGGGACTGTT CCTCCCTTAG TAGGTGTCCC TAAGGACATG AGCATGCCCC
  CTATTGCTTT AGGGGGTTGC ACAGGAAGGA GAAAATCTAA GAGGAGAACC CATTCGATGA
  ACTGCGTACC CCACGTAGCA ACCCTTGAGC ATGCTCTGTC CACAGCCTGA TGACTGGGGT
  CATAGAAGAC AGAAATGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60803883	NES16474303	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49421478					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60803883	NES16474303	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135662593 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Csrp1	cysteine and glycine-rich protein 1			Intron
				Noncoding-Transcript-Variant
Rr419257	regulatory region 419257			1709 bp distal
Rr419258	regulatory region 419258			within coordinates