rs49421484 SNP Detail

Summary

• ID
  rs49421484
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171043566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTTA GAGTTGCTAG ATCCACTGAC
  G
  TCTAGCCTCA GAGCCTTTGA AATCA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss146157117	ENSMUSSNP4769178	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320117259	CHEV_1_173146128	CHEVERUD	SCREENING_POP	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49421484					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171043566 () rs orientation: forward

Symbol	Name	Function Class
Nr1i3	nuclear receptor subfamily 1, group I, member 3	within coordinates
Rr423243	regulatory region 423243	1966 bp distal
Tomm40l	translocase of outer mitochondrial membrane 40-like	13 bp downstream
Tssr9983	transcription start site region 9983	1990 bp downstream
Tssr9984	transcription start site region 9984	1952 bp downstream