rs49423444 SNP Detail

Summary

• ID
  rs49423444
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:28664526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTCCTGGC CTTGTTGTCT
  ATAGCTTTCA GCTCCACACA AGAGAAAAGA CACAGCACAG AAGCATACCT CAACCTCAGA
  ACACAGGGCA TGCTAAGTGG ACCTCAATTT TGACATTTTG TTATAAGAAT GGACTGGAAA
  ATCCTCACTT AAAATTCAAC CTCTGACCTC TCTCAGACAT TCCAACCTAG AGCTAGAGAT
  W
  GTAATAGTTA TTTATTGGCA GACAAGAAAT ACACTTTAAA AAAGAAAAAA AAAAAAAGAG
  CTAACTACAC AGGTAGAGGA AACAACTACA CAGCTCCGTG AAATTACACA CTACAATTAT
  TCAGCTACTT TTCCCAAAGA AATGTCTTTC TTCTATACTG AGGTGGTGGG ACTGGACAGA
  CACACACACA CACAATCTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60561167	NES16570509	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49423444					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60561167	NES16570509	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28664526 () rs orientation: forward

Symbol	Name	Function Class
Fkbp5	FK506 binding protein 5	within coordinates
Gm22146	predicted gene, 22146	443 bp upstream
Gm55779	predicted gene, 55779	1309 bp upstream
Rr524560	regulatory region 524560	712 bp proximal
Rr524561	regulatory region 524561	959 bp proximal