rs49425101 SNP Detail

Summary

• ID
  rs49425101
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:3676160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCTTAAT CCCTGCACTC
  TCCACAGACC AACCAACCAA CCCGGCTCCT GCTACCCGAC CACCTGTGAA ACTACCGGAT
  GCTCCTGTTT ATCTGCCCCT CAAATGCCAA TTTGAGTTGT CTTCGTCTTT CATTTATGCA
  TGGAGCAGGA CAGGAAGTCC CTGACCATTT CATTGATGAG CTGTGGCTTT CTGACCATGC
  Y
  CTGAGAGTCT GTTCCTATCT CCAAGATACC TTTCAGGAAA CCAGTTAAGC TTCTTTTTTT
  CTGGGATAGT GAGGTAGTTC ATGGGCTAAG AGCACTAGCT GCATTTCCAG AGTACTAGGT
  TTGAGTCCCA GCACCCACAT AACAGCTCAC AACCATCTGT AGCTTCAGTT CTAAGGGATC
  TATTGCTCTT CTCTGGCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61076606	NES16054578	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs49425101					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61076606	NES16054578	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3676160 () rs orientation: forward

Symbol	Name	Function Class
Pcp2	Purkinje cell protein 2 (L7)	615 bp upstream
Pet100	PET100 homolog	1925 bp downstream
Rr658952	regulatory region 658952	1932 bp proximal
Tssr80204	transcription start site region 80204	1583 bp upstream
Tssr80205	transcription start site region 80205	1493 bp upstream
Tssr80206	transcription start site region 80206	1234 bp upstream
Tssr80207	transcription start site region 80207	1177 bp upstream
Tssr80208	transcription start site region 80208	1146 bp upstream
Tssr80209	transcription start site region 80209	1118 bp upstream
Tssr80210	transcription start site region 80210	948 bp upstream
Tssr80211	transcription start site region 80211	907 bp upstream
Tssr80212	transcription start site region 80212	872 bp upstream
Tssr80213	transcription start site region 80213	863 bp upstream
Tssr80214	transcription start site region 80214	612 bp upstream
Tssr80215	transcription start site region 80215	580 bp upstream