rs49426120 SNP Detail

Summary

• ID
  rs49426120
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89926516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTACTTTGC TAACCAAGGC CCAGGGAATC ATTAAACTAC
  TACCTTAGCC TGAGTCAGGT CCTTTTGGGG TGATGAAGAG ATGGAGCTGG GATACCGCCG
  M
  GTCTGTGTGG ATCTCTGTTC ATATAGAGGG CCCTGAGCAT TATTTTGGGA GGTATAAGTT
  GTCGACTGAA TCGGGCCACT CTGATAACCA GACTCCTGAC                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60423015	NES15924693	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49426120					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60423015	NES15924693	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89926516 () rs orientation: forward

Symbol	Name	Function Class
Tssr34183	transcription start site region 34183	1596 bp upstream
Tssr34184	transcription start site region 34184	729 bp upstream
Tssr34185	transcription start site region 34185	within coordinates
Tssr34186	transcription start site region 34186	23 bp downstream
Tssr34187	transcription start site region 34187	1727 bp downstream
Ubap2l	ubiquitin-associated protein 2-like	within coordinates