rs49426959 SNP Detail

Summary

• ID
  rs49426959
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43922446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCCAGAGT AGCCATCGAC
  CTCACCAACA AAGCTTCGAT GGCTTTCTTA CAAAAGCATT TAGGTAAGAA ACAGCACGTT
  CCTCTGCTAG GTTCTCAGGA TCAAATAGGG ACATAGTCTT ATTGTAGCTG TTTCCACTTG
  GCTTTTGGTA AACAAAGCAG TGAATCAATT TGAAAAGAAA CATTTCAAAA AGAGGAGTAT
  R
  TGGCCTTGCA TTAATGTGTG TGCATGTGCA TATATGCATA CCATATATAT GTACTCGTTG
  AAGCTAACAG CCCTTCTATG AACCCTAGAG TGGAGTTACA TGTTGAAGGT ACTGACAGCC
  TCTTGCTTGT CTCGAAGCAG CTCTGGAGGT TATGCATTTT CGAATGCAAC CTGGGCCCTA
  GGAATTCCAT TATCACTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62746829	NES17342865	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49426959					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62746829	NES17342865	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43922446 () rs orientation: forward

Symbol	Name	Function Class
Pla2g7	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	within coordinates
Rr527133	regulatory region 527133	11 bp proximal
Rr527134	regulatory region 527134	224 bp proximal
Tssr144713	transcription start site region 144713	244 bp downstream
Tssr144714	transcription start site region 144714	159 bp downstream
Tssr144715	transcription start site region 144715	322 bp upstream
Tssr148139	transcription start site region 148139	472 bp downstream
Tssr148140	transcription start site region 148140	530 bp downstream
Tssr148141	transcription start site region 148141	578 bp downstream
Tssr148142	transcription start site region 148142	627 bp downstream