rs49427102 SNP Detail

Summary

• ID
  rs49427102
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115950188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTCGCGG TCTCCACGTA
  CCTCTATGTA CTCCTCCACA GTTCTCTATG CGCCTCCCTG GTCCTCCTCG GTCGTTCCTG
  GTCCTCCTCA GTCGTCCCTA GCCCTCCTCA GTCCTCCCGA GGCCACCACA GGCGTCTGGC
  AGCCGCTTAA CGGCCAGCGG TGAGCCTCGA GGCAGCAGAC GCGCTTCTGC GTATGGACAG
  R
  AACTCACTTT GAAAAGGACC TCAGGCTCCG AGCACGCACT TCCGGTCATA GGCTTCCGGC
  TGAAGCACCT AAAGGCTGCT GTGTTTCCAC CTAGCGGGAC CTTCTGCTGC CGGGTTACTC
  CGGTGTTCTT TGTGTGGATT TCTTGTTTTG TTATTGGGTT TTTGGTTTTG TTTGTTTGTT
  TATTTTTATT TGTTTAGTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61318585	NES16925722	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49427102					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61318585	NES16925722	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115950188 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2211	CpG island 2211	within coordinates
Ptprr	protein tyrosine phosphatase receptor type R	within coordinates
Rr221625	regulatory region 221625	1646 bp proximal
Taf7l2	Taf7l2	691 bp upstream
Tssr99340	transcription start site region 99340	403 bp upstream
Tssr99341	transcription start site region 99341	350 bp upstream
Tssr99342	transcription start site region 99342	342 bp upstream
Tssr99343	transcription start site region 99343	334 bp upstream
Tssr99344	transcription start site region 99344	326 bp upstream
Tssr99345	transcription start site region 99345	20 bp upstream
Tssr99346	transcription start site region 99346	4 bp upstream
Tssr99347	transcription start site region 99347	within coordinates