rs49427230 SNP Detail

Summary

• ID
  rs49427230
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170471630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGT GGGGGTATTA TCAGGTTCTA
  R
  GGTTGTAGCA GACATGAAGA TTACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146140277	ENSMUSSNP1817825	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss320111986	CHEV_1_172574192	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49427230					SNP	A	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170471630 () rs orientation: forward

Symbol	Name	Function Class
Cpgi995	CpG island 995	109 bp proximal
Olfml2b	olfactomedin-like 2B	471 bp upstream
Rr14047	regulatory region 14047	1430 bp distal
Rr28935	regulatory region 28935	within coordinates
Tssr280	transcription start site region 280	283 bp downstream
Tssr9927	transcription start site region 9927	1210 bp downstream
Tssr9928	transcription start site region 9928	388 bp upstream
Tssr9929	transcription start site region 9929	429 bp upstream
Tssr9930	transcription start site region 9930	462 bp upstream
Tssr9931	transcription start site region 9931	511 bp upstream
Tssr9932	transcription start site region 9932	528 bp upstream
Tssr9933	transcription start site region 9933	724 bp upstream
Tssr14922	transcription start site region 14922	267 bp downstream
Tssr14923	transcription start site region 14923	318 bp downstream